NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265760_10002865

Scaffold Ga0265760_10002865


Overview

Basic Information
Taxon OID3300031090 Open in IMG/M
Scaffold IDGa0265760_10002865 Open in IMG/M
Source Dataset NameMetatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5035
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000065Metagenome / Metatranscriptome2788Y
F008095Metagenome / Metatranscriptome339Y
F095981Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0265760_100028651F095981AGGAGMFPNEQENWLALYKAALLELDLQKMPARIALANKALQERSREIQKSCGYYWEKLEIQYAKQNLQAAERMK
Ga0265760_100028654F008095GAGMDKSSDQDRGKGATEQNPQNQGEGGNTSMQGQLGHRDENAELKNADSDLSG
Ga0265760_100028656F000065GAGMTQITEKLTPKLRKAAQPPLSHPGATPDADRAKKPPLAEPSAANEQLSPGDRVEGLGNFGKPTGEIGTVEQANEDDALVKWDDDGRTRLRQPWLKKI
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