Scaffold Ga0315823_116798

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315823_116798

Scaffold Ga0315823_116798

Overview

Basic Information
Taxon OID	3300031105 Open in IMG/M
Scaffold ID	Ga0315823_116798 Open in IMG/M
Source Dataset Name	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T12 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	705
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.7417	Long. (^o)	-117.7042	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009305	Metagenome / Metatranscriptome	319	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315823_1167981	F009305	N/A	LLHGIDMHYDXKNESTYDGLEPEMSWXDEALGNELGTFIEALIILNIICWWFYPEPEALSYEIFMWGDIGMVSDVRFYGVAPHWYFRPFMAXLIVCPHHKTGIFGLALFFFALFHQPTLHGFNENGSYYKRRLLFTINKLKQKTFYKQSNLNVELNLFFQTTYALFVMCALYTSSFLPYGRFYNRLGGNIGMLVAYLYVLLYVSITSLRRPYWLELYFYFIFNKSSFLKRLKIS

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