NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272444_10407081

Scaffold Ga0272444_10407081


Overview

Basic Information
Taxon OID3300031111 Open in IMG/M
Scaffold IDGa0272444_10407081 Open in IMG/M
Source Dataset NameMarine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Form-13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)985
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Marine Sediment → Marine Sediment Archaeal Communities From Little Sippewissett Salt Marsh, Falmouth, Ma, United States

Source Dataset Sampling Location
Location NameUSA: Falmouth, Massachusetts
CoordinatesLat. (o)41.5758Long. (o)-70.6394Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063346Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0272444_104070811F063346GAGGMNVEHRTSNVEHRIMYSTIYNKDKATRPPRLSEPTKGRRALNTARDGGQERLPHSTFDVERSMFDVQIVASEITTKPSYHVEITYTGQEF
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