NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318490_1023521

Scaffold Ga0318490_1023521


Overview

Basic Information
Taxon OID3300031116 Open in IMG/M
Scaffold IDGa0318490_1023521 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil fungal communities from Los Alamos, New Mexico, United States - Jemez Pines Pi 5A (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)725
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Forest Soil Microbial Communities From France, Sweden And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameUSA: New Mexico
CoordinatesLat. (o)35.8911Long. (o)-106.2978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059539Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0318490_10235211F059539N/AMEAKVLVPASRHHGTFYRKRYVSDKVRTRPVPQFGRVLAKLNLRANQNTQVSDREYMAGKYYSAAYEHRFVPGVRELLLESAQAMSAKPHFDVRLTKMNEMGGVENIRTLVKESPALDVDSFSDYLRDVYGIGFEDLMDAYGRVSHGCLNWLDQFTFVDKKGKTHSKHPPRAQMIGGEVIEALIRVDI
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