NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0061019_10016824

Scaffold Ga0061019_10016824


Overview

Basic Information
Taxon OID3300031118 Open in IMG/M
Scaffold IDGa0061019_10016824 Open in IMG/M
Source Dataset NameCoassembly of Cow X and Y Switchgrass
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)869
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location
Location NameUSA: Illinois
CoordinatesLat. (o)40.102108Long. (o)-88.227299Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071853Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0061019_100168242F071853N/AMPKKWKRTIGGAIDLEPRVKYDYRETVPGPGRYEPSYKLTKPHAFTYFMGEKYKTLTLNLLTGTDSVVGPGKYDVVYSMNDLEAAKDKKKKKDWRRALSEIKRNKYTSIHQDPPIWSLGKDKRKGLFNKTWTKNETYEIYSCVGDQIRTHKRSEPKIN

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