Scaffold Ga0061017_10082420

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0061017_10082420

Scaffold Ga0061017_10082420

Overview

Basic Information
Taxon OID	3300031119 Open in IMG/M
Scaffold ID	Ga0061017_10082420 Open in IMG/M
Source Dataset Name	Coassembly of Cow X and Y Corn Stover
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	586
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → unclassified Nostoc → Nostoc sp. MBR 210	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location
Location Name	USA: Illinois
Coordinates	Lat. (^o)	40.102108	Long. (^o)	-88.227299	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052999	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0061017_100824201	F052999	N/A	DSNCDLEILCFCENGFTFSTKKFNIKESNLEYELISDLIKFDENWSLEGDINKDNLSIKLFKIIKLKFTMINTKENSEKIIRYLCQKISSLSKEVNELKNKKETKEEIKVIPLTFANGWSNYGNIYAPGKIIKKGNEITLSGLIKGTNFSTVCILPEDCRPKQVLIFTVNHHNSIMRFDVYPNGNLAYQAGSNS

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