Scaffold Ga0138345_10103870

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0138345_10103870

Scaffold Ga0138345_10103870

Overview

Basic Information
Taxon OID	3300031121 Open in IMG/M
Scaffold ID	Ga0138345_10103870 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Southern Atlantic ocean transect - DeepDOM_S15_Trap_metaT (Eukaryote Community Metatranscriptome) (version 2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	809
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location Name	Southern Atlantic ocean
Coordinates	Lat. (^o)	-2.7	Long. (^o)	-28.5	Alt. (m)		Depth (m)	150
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003744	Metatranscriptome	470	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138345_101038701	F003744	N/A	NQVPVKMPKDYFEVEEVKVEESEEDKQAKVLEFVYQVTRKSCNPGEFASWIQDGKIVEEVIFKSCPTPLGKKQRAFPSDQMKPADRIERIVNDLFEFGVPIEVLFDVDDLLKAKNIPKVTACLAEIKNMVYTGQGRSKLSSTLDGVTKAPFRCANCGEKFPRSDQLKYHMCDNHPELIEPGLRALLMKNRK

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