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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031121 Open in IMG/M |
| Scaffold ID | Ga0138345_10388279 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from the Southern Atlantic ocean transect - DeepDOM_S15_Trap_metaT (Eukaryote Community Metatranscriptome) (version 2) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1987 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Southern Atlantic ocean | |||||||
| Coordinates | Lat. (o) | -2.7 | Long. (o) | -28.5 | Alt. (m) | Depth (m) | 150 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000049 | Metagenome / Metatranscriptome | 3277 | Y |
| F000139 | Metatranscriptome | 1948 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0138345_103882791 | F000139 | AGAAG | MTFKKRQNIYNESKNKISTLFETINANFKCMSITLPEDKKKIVEKEIKAVQEKLEVVGRFGETVAKVEEFCNRLNAFDVSLKTLNDWMMTATKELDDIKAAAGSMLPEDRVARTMDLQEDIAAKLEILKANTATELELLPQGDKVPQDAQDYKDELTRITKFIADLDARTRKECDAFSEDVKYWAEYRTGIKEFTPWLVQSETAVTGGLSKPSDLAEVKALNEKITNFDKTCLSYLKVLEAAEGASKKMTTHAEADTEVAALKERYSKVKAVSDTWVKKVDILLKEWVLLDNTVTELNSWVAKDKSSEGENQFSLEKMESTLGELKNIFKQKEKLVEGL |
| Ga0138345_103882792 | F000049 | AGGA | MRHQKMAEWMENVEKAIARIMADKVYTSAEFKRERDNFHALCKDLERAEVKKWLAQILEILMAERAKEQRNDENGKLQDTIKMHEDLIPTVMKTQVMVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCVENVEELIERQEKSLVQLQTKRSVVKDLIEKGKKILENPDKPKFLEGHVDRIESGWDETKQKAQDRLQLLQETKDAWVGYAENNETIANDFDNAEEEIKKVKKRFNLQEAMDDLQKKTKYLQRI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |