NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138345_10742054

Scaffold Ga0138345_10742054


Overview

Basic Information
Taxon OID3300031121 Open in IMG/M
Scaffold IDGa0138345_10742054 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic ocean transect - DeepDOM_S15_Trap_metaT (Eukaryote Community Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)720
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-2.7Long. (o)-28.5Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022419Metagenome / Metatranscriptome214N

Sequences

Protein IDFamilyRBSSequence
Ga0138345_107420541F022419N/AMSLRYTALLAPACAFTHPQQPRRIVSRRDYSSIDDVFDSVFDDAFDAWSPFGLSRRRDPWSQFGLSRRRSPLAQQFGQLKRLSQAFEEQLQRVDEDDFLADTPLGQRRQLGTPKEDAPTKTDESTSSLYEAPATKDCDAPCCDEAVAPAAPRGYAYSWSSSSLTQNGETRTTVRKNFKD

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