NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308151_1008050

Scaffold Ga0308151_1008050


Overview

Basic Information
Taxon OID3300031124 Open in IMG/M
Scaffold IDGa0308151_1008050 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_140 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)925
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081665Metagenome / Metatranscriptome114N
F085418Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0308151_10080501F081665AGGAGMAGHDRSPQHQPRADPGDTWERAHGPYLCFVAAFLRQAVTDARRTPKGTGSWTANTDGGTAGRQREAQAFLLDVNRLAPWVELTGADVDKMQGGLLQAAGLTRAP
Ga0308151_10080502F085418N/ASSEPQRHRARSREAGITERTVALRHRRRADRAQTARLDAVEAGITTAYSTRWHHLGGLAAFFALAALLLCFSRVL

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