NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170823_17030586

Scaffold Ga0170823_17030586


Overview

Basic Information
Taxon OID3300031128 Open in IMG/M
Scaffold IDGa0170823_17030586 Open in IMG/M
Source Dataset NameOak Summer Coassembly Site 11 - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5157
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102308Metagenome / Metatranscriptome101N
F105715Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0170823_170305863F102308AGGAGMSCIRSPKKRKAEAKRVSTFEILARFEVEHETFSRLAFVITGDIGAAERSVSEARELVTNGAHPFPFREQLTEWVKWVTIEAAITNSLHEIARCESRYVNQNCMHSEHLLNGNNSKLSEFRNFLLQIDPEIVIGELDPLARAVAILRTTARASILDCILRLKLSLDTVLAANCRAMTWFEEKRTGLSDRAPTPESKLEKP
Ga0170823_170305864F105715AGGAMLRAEFNQRNNGLVLKLEGRLVSAWAVQVKSLVSRRFVRNGLLVDMSEVTYVDSVGEQLLLWVRDLHAKFVAETCYARDVCERLHLTLKGDADRPVPSATEVLPSSTVVPLPRPGDLP
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