NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170823_17442491

Scaffold Ga0170823_17442491


Overview

Basic Information
Taxon OID3300031128 Open in IMG/M
Scaffold IDGa0170823_17442491 Open in IMG/M
Source Dataset NameOak Summer Coassembly Site 11 - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1098
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002770Metagenome / Metatranscriptome531Y
F003044Metagenome511Y
F004064Metagenome455Y

Sequences

Protein IDFamilyRBSSequence
Ga0170823_174424911F003044GGAGGVEFRTTVTCSKCKQPILSGQGFGFVYFKIPGKEGYRFFHRTFGGADCW
Ga0170823_174424912F002770N/AMNIIRTQLFRAIVIITLISSCVYLAYGKESPNIYIVRNVAWNDFIAQIASVPYEAPQDSLSKEMLIIQRFLKSHETEVRVGIYDVEVFKTIDQARARLQKADRDLETLRNELSYKEEQARLGR
Ga0170823_174424913F004064N/AMRGAFVVKLGPETRPSEGRFEGLVEEVDSGRELRFRSAGELMNFLGQRFDLAKISVGETRASNKIEPVPSRKKNPRKERKPS
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