NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308024_1000232

Scaffold Ga0308024_1000232


Overview

Basic Information
Taxon OID3300031140 Open in IMG/M
Scaffold IDGa0308024_1000232 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #420
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24377
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (27.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023454Metagenome / Metatranscriptome210Y
F029110Metagenome / Metatranscriptome189N
F083248Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0308024_100023237F023454N/AMEAREIDHMLELGYWIQVSPLANAGSGWICGIYKRGKISGNWITEVSKKFDNPLGCFEWADKEIVQLINKVK
Ga0308024_100023241F029110N/AMNEEISKLLEENAFNVANSGTGSHKDIGGEKEVQKAWQIIQKKIKKIDAAFYEVIKER
Ga0308024_10002328F083248AGGMLKLATSQSNTVYLSLEENSSNAFDNYYLLVFTNLQTRVSEAKVVTKGDVNARSVALTFNVNTGAEPKYTMQENSFFSYDVYEQTSSSNTDIADSSVLGLRETGKAWVNGTSEVVYVKQAEANNTNSVYLKV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.