NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308021_10008772

Scaffold Ga0308021_10008772


Overview

Basic Information
Taxon OID3300031141 Open in IMG/M
Scaffold IDGa0308021_10008772 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #351
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4448
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016619Metagenome / Metatranscriptome246Y
F034394Metagenome175Y
F042629Metagenome158Y
F053638Metagenome141Y
F087902Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0308021_100087722F016619N/AMAIAIVQNADHKSLTGKTLSIQAELTSKLKSTIVDVTYGASDGYATNGNVVDLSLGSRISTVIGAQILHCNKGLLLQYVPAAAGAAATGKIKCFGHTPTSSTATVVALEELDSADTAVNSMTIRIRIIGY
Ga0308021_100087723F087902N/AMTYTNHNVKDISASGTVKAGHGVMVAVYVTKAGAAGDKVVFHNGADASAPAEFSVYGEGIQHVQDVFRRFEAGIYAEVTGTTARYITVFK
Ga0308021_100087724F034394N/AMVTTTTYCTVGDISDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTKKITKETHNLPLLYTFGWGTPVFLKHRHILDFDLSAGDKIEIFKGESDTWENILGNTQWYNIEPVYGTLFLRGFLFTILRHNRIRVTYRYGGEDFAGDTVVPLDIADAIIKMTSIEVMNTSFRMDEIPSGGSVSPSESKRYWQEDIDLCISNRREVFTIT
Ga0308021_100087726F042629GGAGMTITTYDAVDDIIDLLRTKWSSLRPPHITKVWEKRTVGFIDDRSDEIIVSPKGENIEVFGLGGSAFWHEQIVELDIRTYQDIKRHNKVVKEVVKIIKDNIVGTTYTDLRVVGSYSRNFQFRNMYDYVITLSYRKANPV
Ga0308021_100087728F053638N/AMTLIPVDIIYNGKPAVVEFEDSLTFGDTETLIGNSVDISDVTKPKIDIQRYRINLLVLTIKKAPFKIGDVTTIKMTDSKVIKSILKEIVKIHPLTTYIEDWMETFMSSQDMKNLDMPSTTTVPHNSAGTKKQSIGKK
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