NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308022_1007570

Scaffold Ga0308022_1007570


Overview

Basic Information
Taxon OID3300031142 Open in IMG/M
Scaffold IDGa0308022_1007570 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #353
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3630
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016619Metagenome / Metatranscriptome246Y
F034394Metagenome175Y
F042629Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0308022_10075701F016619N/ALTGKTLSIQAELTSKLKSTIVDVTYGASDGYATNGNVVDLSLGSRISTVIGAQILHCNKGLLLQYAPAAAGAAATGKIKCFGHTPTSSTSTVVALEELDNADTAVNSMTIRIRIIGY
Ga0308022_10075703F034394N/AMVTTTTYCSVNDIIDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTKKITREVHDLPLLYTFGWGTPLFLQHRNILILDNSEGDKIEIWKGETDSWENVVGQDQWYHCEYERGTLHLRGYLFTILRKNRVRVTYRYGGENFAGDTDVPLDVADAVIKMTAIDIMNTSFRMDEIPSGGSVSPSESKKYWQEDIELCISNRRETFVIP
Ga0308022_10075705F042629GGAMTIITYDALDDVISLIKSKWSNLRPPTISKIWDKRTVGFIDDRSDQVILSPKAEAIQIFGLGGSSYWHNQMIELEIRTYQDIDRHNSVVKEIAKIIKDNITGSTYTDLRIISSLSKNFQYRNMFSYVLTISYRKSDPV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.