NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308022_1020737

Scaffold Ga0308022_1020737


Overview

Basic Information
Taxon OID3300031142 Open in IMG/M
Scaffold IDGa0308022_1020737 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #353
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2123
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016619Metagenome / Metatranscriptome246Y
F017844Metagenome / Metatranscriptome238N
F034394Metagenome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0308022_10207371F017844N/ATSDAEGYGYPRIGIQVAIPTEYYEATRRSAGYPFVNNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL
Ga0308022_10207372F016619N/AMAIAIVQNADHKSLTGKTLSIQAELTSKLKSTIVDVTYGGSDNYSTGGNVVDLSLGSRISTVIGAQILHCDKGLLLQYVPAAAGAAATGKIKCFGHTPTSSTATVVALEELDSADTAVNSMTIRIRIIGY
Ga0308022_10207374F034394N/AMVTTTTYCSVGDISDFLRVPITSTTTPNKEMVRKIIARKEAELDRRIGHTWKTKKITREIHNLPLLYTFGWGTPVFLKHRHILPMDSSLGDKIEVWKSETDNWGNVLDNEQWYNMEYELGTLFLRGFLFTILRNNRIRVTYRYGGEDFAGDTVIPLDIADAVIKMTSIEVMNTSFRMDEIPSGGSVSPSESKRFWQEDIDLCVSNRREVFTIT
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