NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308025_1005632

Scaffold Ga0308025_1005632


Overview

Basic Information
Taxon OID3300031143 Open in IMG/M
Scaffold IDGa0308025_1005632 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #422
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5339
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007004Metagenome / Metatranscriptome360Y
F009987Metagenome / Metatranscriptome310Y
F052862Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0308025_10056326F052862AGGAVDDNEQSRESQTQILEIKKDIEHLLYVLEEFEKDKEFLKHHISEKNTQRLEDVSKINARFDKHIQTELTYHESVRDKIVAEHRIIHKRIGQVERWVWVFFGGFTVISALLGKASFSTLFG
Ga0308025_10056327F007004AGGMKNIILGLCLILFVGCANSNAYQKPTVRIVGEAQMSKLSNGNYEVTPRWIKDRFDAENSMIKQLEDCREGGR
Ga0308025_10056328F009987GGAGMIGSIIGNALGLGLKIMDKIEKNSDKASFEEFKARKKEMDNTLADSDVEGIDSMFEYLADRARGGSTGRKG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.