NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308025_1035374

Scaffold Ga0308025_1035374


Overview

Basic Information
Taxon OID3300031143 Open in IMG/M
Scaffold IDGa0308025_1035374 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #422
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1958
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011529Metagenome / Metatranscriptome290Y
F076496Metagenome / Metatranscriptome118N
F098043Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0308025_10353742F098043AGGAMKKDLTKIVNDLLWAADDVCLDNSKDPCDMSSANADIVRCPLGQNDWDHVPDKGVRAILQQHGLKLSDINALIDAGVMVITPNDDHGGCVIDDRCLHVSMHMDKVLKHMSLSNHNLLQVTPDQMMAMS
Ga0308025_10353744F076496GGAGGMTKRSKEAQAFIDANPDKFRVVTPEENRKTLEKQSGGYFKGRSVMGPSKKKGKTS
Ga0308025_10353745F011529AGAAGGMSWIKESKRVKISEIEGIRLRSCRLWLDKDGFHPFLDQDTLIKPDLQKSMGCKFSDLPKEAWDTMDRYDEAVAKRSIYARA
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