NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308025_1055745

Scaffold Ga0308025_1055745


Overview

Basic Information
Taxon OID3300031143 Open in IMG/M
Scaffold IDGa0308025_1055745 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #422
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1512
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F010571Metagenome302Y
F059345Metagenome134Y
F100938Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0308025_10557452F059345AGAAGGMNDEHTKLESIHSALQELQQDFNIPDDHEHLEIAFKFTEDLREAHFRKEKD
Ga0308025_10557455F010571GAGGMSNIITETYADKLYEELYEKHYEEVGKTTDDVEYIEREAERLAEIDLDNFEMEG
Ga0308025_10557457F003976AGGAGGMSRTYNDYYFEKLDILDTLDKLEMSVRFLNAWVKEPMGLENAKYILEKNANRKFNWFDMNMIKDIVTTEGGVXX
Ga0308025_10557459F100938AGGAGMSDWIEGTKPRYLECIYETSTDFDLEELGIDWDKVDDYYVKYGSLTVKFKDGTTQDYDGDEGEIDYKWAVRENIFDEGWTLVEGLNXXRIKNGISXEKLXAI
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