NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255311_1058796

Scaffold Ga0255311_1058796


Overview

Basic Information
Taxon OID3300031150 Open in IMG/M
Scaffold IDGa0255311_1058796 Open in IMG/M
Source Dataset NameSandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)812
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: Vancouver, British Columbia
CoordinatesLat. (o)49.2598372Long. (o)-123.2459363Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034268Metagenome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0255311_10587961F034268AGGAGGMKKPVPLRNQSVMLALASLALMGVFPQSLLAQQQSSYKPPVDPAAAPPRVKAIVETINQRARELGLIAVSDDPEQAAFVRRRLNAQLTEDFGKLHSINVERIVPQSSGLSLDYKTLSDATADLKSRATRIKYNVPILQVVDKGEKIRYDENSDLASMLPELSRVISSFLGSPVFRLSSPNDAELRLKASRDLDGIIKLSETINRIAKRSTRATASN
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