NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307499_10159257

Scaffold Ga0307499_10159257


Overview

Basic Information
Taxon OID3300031184 Open in IMG/M
Scaffold IDGa0307499_10159257 Open in IMG/M
Source Dataset NameSoil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)668
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.5468Long. (o)-122.376Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021341Metagenome / Metatranscriptome219N

Sequences

Protein IDFamilyRBSSequence
Ga0307499_101592571F021341N/ASGLAASHIPEQPRGSSSGSTITVSYTSLPPSRDKSADPTFLFAPPSQLRSRSKLAVCGGLIAIISSAVITAALGIGQFQPADIWHQLGILPTTELASSLSRPAQLNPEQAIPRLIVQSSRVSSGEPAPLGVALRGRAEGAVVIIKGLVPGMELSAGNAVGTDAWQLPATDVGDAWVAPPEGFVGSTHLVAELRLSDEKMADQQMIQIDWVSAIAAPAGTHGQ
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Institute for Fundamental Biomedical Research
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