Basic Information | |
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Taxon OID | 3300031198 Open in IMG/M |
Scaffold ID | Ga0307500_10076323 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 860 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oregon | |||||||
Coordinates | Lat. (o) | 45.6996 | Long. (o) | -121.669 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F021500 | Metagenome / Metatranscriptome | 218 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307500_100763232 | F021500 | N/A | MAPMIPRLSVTALLVLVLSALGPLASASPPDPGWIGGFYDAADYDDVVLAVTGMDPAPPLAPVVTVEPRAIRVGSVALPARPAERVFALTAPAVRAPPSA |
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