NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307931_1042272

Scaffold Ga0307931_1042272


Overview

Basic Information
Taxon OID3300031208 Open in IMG/M
Scaffold IDGa0307931_1042272 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #47
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1051
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018841Metagenome232Y
F028317Metagenome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0307931_10422721F028317N/AMLSNHDIDVLVVKMGINNFKGCFYKDTLKKIEPSSSYIINLNSEFNEKDERNAGSHWV
Ga0307931_10422722F018841N/AQLSKLRNGHGIRISRAMFGSGDDMIIDPGNFNNMMKKLERGKGAVISMSGGEIEQNKMEGTGLFADSGRKSGKISRIKKAGKWRDFSDETLRKGIDTARYGFEQYKEATNPLASEGKKALRGLSKMFGGELDDDEIEGEGFFDDIKKGYNRKVKNSALGKALRESAGMAIRDGYDRGAKELGKNKYGKPISQYMRNKRGSNVDKLTGYTGLGLKLAGDGKMKSAVYRRPGLDKLLTKHGKGLRMSGSGKCEMCGGSMNDKFLFSDIAL
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