NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307980_1027917

Scaffold Ga0307980_1027917


Overview

Basic Information
Taxon OID3300031216 Open in IMG/M
Scaffold IDGa0307980_1027917 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #1060
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1326
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006034Metagenome383Y
F018841Metagenome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0307980_10279171F006034N/AMLSNHDIDELVVKMGIPNFKGCYFKDTLKKIEPNSSYIINLNSEYNEKDERNKGSHWVALITDDMKRGIYFDSYGEREPTQIKNLLKCNQYKLGHTSKNIQSLMSNLCGFFCLAFIYFLTVSKQRTKNIIQDTAIFLNLFEDLDLVNDVYKNEFIL
Ga0307980_10279172F018841N/ALERGKGAVMSMGNDELEENEIQGTGLFAGAGNKSGKISRHKKALKWRGFADDTLRKGIDTARYGYEQYKEATNPLASEGKKVIKGLSKMFGGEMEGDGLFDDIKKGYNRKVKNSKLGSALRESAGNVIGDVYDRGGRELGKNKYGKTLSQYMKDTKGSNVKRLTGYTGLGMKLSGEGRVMRPAVVRHDLSKLKHGKGLRMSANGLTMGGNCEMCGGSMNDKFLFADASL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.