NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307980_1039051

Scaffold Ga0307980_1039051


Overview

Basic Information
Taxon OID3300031216 Open in IMG/M
Scaffold IDGa0307980_1039051 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #1060
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1067
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004242Metagenome / Metatranscriptome447Y
F084937Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0307980_10390512F004242AGGAMGTFGMKKPESPRLGLKKQAHHMMRLGLKASDVAMAAGGVLALAGPETIPVVSALEAGGAAGKAVFGLGSKLV
Ga0307980_10390513F084937N/AFEIINNDSYPTTCIDLLGFQKDFNNNVVQTGDILLSSTVNPSFHITMPSCVNFTGTRFIFLKFKNISVNNLNSKGLTDDAIVRIDNNVPFGYIIFYKPAEAHRFLVGKQTITSIQFTLTDSQGNDLNIFSNDAQITLKIEYMYKPEMRSMEEGTINYELRKLGKIPKDEETLKGIYNPETNEFIRE
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