NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307939_1039923

Scaffold Ga0307939_1039923


Overview

Basic Information
Taxon OID3300031220 Open in IMG/M
Scaffold IDGa0307939_1039923 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #122
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1094
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057122Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0307939_10399231F057122N/AMSELSTVLIQDSRYNDITDRVTIGVKDGPASVIYQKYQPNSNSSSSTLFNVNVPSENTLVDRNIHIQGNVSCYYTTTIVDGASRTFKVVPAAFPLNQALQSASLTLNNSKLSVQTQDILPVYLKQFHQKFLSKNCQMTPSYVDKYYGKVADANTNSGSGSYMSGIESAEKDSDTVGRLNENFTVTVYRGTQAGTGGTVVNPTATGEYTVANATGANVVVTVVCSVSVSEPLLGLPTATLKEDESNYLGINNLELLLQWNDMRNVFNISGTDTIWSSNAGDIATNLVISDAAKLNLKYMSLHASQYAKLNAKNVLPYDEIVS
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