NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307939_1044780

Scaffold Ga0307939_1044780


Overview

Basic Information
Taxon OID3300031220 Open in IMG/M
Scaffold IDGa0307939_1044780 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #122
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1020
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014810Metagenome260Y
F020291Metagenome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0307939_10447802F020291N/AMYYKGTKTECEDYNLEVYNGTESMKQDPFTTSYASIQEIEGQFYILKHKDFNSNMEEVSQPPKNTEL
Ga0307939_10447804F014810N/AMSIFSENLGVIITAITGAVGGVFAFFTGKKARDSNANIEIGKAYELMAKQNNAFIITMTDKIDKQTKKIEHLEGEVNGLRIENRQLLNELKKYRQ

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