NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307948_1116806

Scaffold Ga0307948_1116806


Overview

Basic Information
Taxon OID3300031221 Open in IMG/M
Scaffold IDGa0307948_1116806 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #280
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)861
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021861Metagenome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0307948_11168061F021861N/AMDKKEYNNNVKKIAKLMSLESKVNIVGSAKVRRSIFYSDYDSFSTVKGKNENMIYNHFKSVFEIIGNSENTIITDFKMGEFRGKPLRWDYEALKRRENNGITFEQALKQKSMIKMDVVTLLNGRYIEITEVYNI
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