NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307497_10015254

Scaffold Ga0307497_10015254


Overview

Basic Information
Taxon OID3300031226 Open in IMG/M
Scaffold IDGa0307497_10015254 Open in IMG/M
Source Dataset NameSoil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2265
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.0356Long. (o)-122.86Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008918Metagenome / Metatranscriptome326Y
F041225Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0307497_100152542F041225N/AMVAVTAVAAVLAGTLTAATPRLSVHPSSVARGGTVTVSGKGCRARDVVYLISPPFVGQAFVAHSVATRARANGTFSRSVRIRASIRKGRYLITARCGGGNLGVAARLRVY
Ga0307497_100152543F008918GGAGGMEAAVGVGRPRSVAGWTILGGVLYVILFVIGTIFLFNGAPDTSSAPAKIIAWYSDSGHRDQVNVGWILTTLAVFFLLWFVAALRRAVSTVDPEGILTGVVGIGGGVYAALAFGSVALTAGLRTMSDDTYQHRVYPELIHAADDVGWVMHATGAVALGAMIIAASLAFMWGGVWPTWAGWVGVLVGILTLGSIAFFPQFLFLLWILVVSILLFLRPNSPARLP
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