Basic Information | |
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Taxon OID | 3300031226 Open in IMG/M |
Scaffold ID | Ga0307497_10015254 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2265 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Washington | |||||||
Coordinates | Lat. (o) | 46.0356 | Long. (o) | -122.86 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008918 | Metagenome / Metatranscriptome | 326 | Y |
F041225 | Metagenome / Metatranscriptome | 160 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0307497_100152542 | F041225 | N/A | MVAVTAVAAVLAGTLTAATPRLSVHPSSVARGGTVTVSGKGCRARDVVYLISPPFVGQAFVAHSVATRARANGTFSRSVRIRASIRKGRYLITARCGGGNLGVAARLRVY |
Ga0307497_100152543 | F008918 | GGAGG | MEAAVGVGRPRSVAGWTILGGVLYVILFVIGTIFLFNGAPDTSSAPAKIIAWYSDSGHRDQVNVGWILTTLAVFFLLWFVAALRRAVSTVDPEGILTGVVGIGGGVYAALAFGSVALTAGLRTMSDDTYQHRVYPELIHAADDVGWVMHATGAVALGAMIIAASLAFMWGGVWPTWAGWVGVLVGILTLGSIAFFPQFLFLLWILVVSILLFLRPNSPARLP |
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