NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307928_10053407

Scaffold Ga0307928_10053407


Overview

Basic Information
Taxon OID3300031227 Open in IMG/M
Scaffold IDGa0307928_10053407 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #232
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2555
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003552Metagenome480Y
F012281Metagenome282Y
F061579Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0307928_100534072F012281N/AMLSNHDIDVLVEKLNIPNFKGCYYKDKLKSVQPNSSYIINLNSEMDEKGDRNTGSHWCCLVTDDMKQCIYFDSYGEREPNEIRNLLKCNQYTIGHTSKNIQSLMSNLCGFFCLSFIYFLSVSKYRTKNIIHDASIYLDLFEDLDKVDDVYKNEFVLSLFFTDTKSKTLLLGNNNIGMSKENKIDNRFSIEDKKLRH
Ga0307928_100534073F061579N/AMNITLDLSKGQLSKLRNGHGIRITPTMLGSGVEMIIDPMTFHNMMKKLDKSKGVVIKMGSNEIEMNKMEGTGLFAGAGNKSGKISRVKKAGKWTGYVDDTARMGIDTGAYGYKKYQEAKNPIQSGVKKMFGFGDMDMEGGKISMAAIKQSYNKNVKNTKLGKALKETAEKGLGQVYDTGTNMIGNTRYLGGVADALKKGKAKNVSKLVGMSGLGLKLQGGEMKDARYRRPITMGNGMHMGGGMCSMCGAGNDKFLFSDQAL
Ga0307928_100534074F003552N/ANVNVFDDGLPQLMAHINNFNVLVGGSNVLHQDSRYTYQQFNNEFFHEFGINGNQSSGLGSSLIDFKGWLKKPYYYVNCSRVPMEQQNAYRSLQIKGTNSSSLAVDYVIFAIYSKSFSLDVISGNITKTD
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