NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0299914_10402065

Scaffold Ga0299914_10402065


Overview

Basic Information
Taxon OID3300031228 Open in IMG/M
Scaffold IDGa0299914_10402065 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1195
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)57
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006941Metagenome / Metatranscriptome361Y
F082658Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0299914_104020652F006941GAGMRSFGRQCRGQGKVFVKLVRQTERRLLDLGESIETWTQEAKDLLHQDAQLSEAQRQRLLRDLEATSDAHRQVVKQSQRLSQGKKLHQFKIVNAYDPTIAPIIKGKSNCPAQFGRKTGILSEPASGFLFAHRVPEGNPSDPSYVLPLLDQVQRAIDLVSSPNRLQVHSLGGDLGVNDAELRYALHTRGILTVGIPTTVEPIHPHPSPDEVLDILNASGLNRLRTPH
Ga0299914_104020653F082658N/ALVAIQCAAAMEDGLVSPAHLLVDTFPSEQGSQRVTDATTLYKAQKKPFISSRASASSAPELPRP
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