Basic Information | |
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Taxon OID | 3300031229 Open in IMG/M |
Scaffold ID | Ga0299913_10098616 Open in IMG/M |
Source Dataset Name | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2851 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 42.9888 | Long. (o) | -108.3994 | Alt. (m) | Depth (m) | 38 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F036163 | Metagenome | 170 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0299913_100986161 | F036163 | AGGAG | MELSQLNVMYGHLEGTDGKFARDPSGYLSIEAGIYEKHGLQVTWRHVQGTEARYQQLESGAAHISMVVGRASLQHFLDIGSTRILGCVMNSCSYYLMAAAGIEKLRGLEG |
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