NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170824_103241334

Scaffold Ga0170824_103241334


Overview

Basic Information
Taxon OID3300031231 Open in IMG/M
Scaffold IDGa0170824_103241334 Open in IMG/M
Source Dataset NameCoassembly Site 11 (all samples) - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1387
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Mazerulles, Grand Est.
CoordinatesLat. (o)48.7585Long. (o)6.3578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001759Metagenome / Metatranscriptome640Y
F008209Metagenome / Metatranscriptome337Y
F047195Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0170824_1032413342F001759AGGAMTLKSALQDLRETTLDAVSGLLAKLAYLGSLRRREGGYLHWGMSMVHGEEASDRALEAAHTQVLSTVLRTPIPDLVEDLRESSQDSQKPAAAYVEGMREQYRDLLPSPEDAASAHHLNSVLVALSSLEKNQKRATPSASSQPLPPGR
Ga0170824_1032413343F008209GAGGMKLSRLLFQNKEKTTVKRALLIVAAAVFFLNTLVVPTLAHADGGSSGGNCSGSSACKP
Ga0170824_1032413344F047195N/AMLQPHSFLWHYLWVAPNVLLVVLALLMWKRGLHREFPAFFGYALFEAAGSTFIYAIDVTPSVSATMYWWSYLVFLIVEVFIKFVVIGEAFTHLLRRYQPLGKLAKVLVSGVGVILVFTATIIAAYANP
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