NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170824_107908807

Scaffold Ga0170824_107908807


Overview

Basic Information
Taxon OID3300031231 Open in IMG/M
Scaffold IDGa0170824_107908807 Open in IMG/M
Source Dataset NameCoassembly Site 11 (all samples) - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4237
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Mazerulles, Grand Est.
CoordinatesLat. (o)48.7585Long. (o)6.3578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017534Metagenome / Metatranscriptome240N
F026527Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0170824_1079088072F017534N/AMSDEDLIKQAYEDFIKNLFKNFYDGYTASNSPTHEKAAEQIFQNAVKAARNARDRALSILPK
Ga0170824_1079088075F026527N/AFTKKFSNKRDGEKIAKFKTYPIAQPALACFCMSRLLGHLVEVPPAAYRTMDVREFQKVGNQARETGHPSCTQAWADLRSWVQSVNPKLVLLGGQLVYGSLAQNPRGENSSPEDYWTVGTIRGHSFYKVLSSKAPLASILNLNDVKSLQDLALARDMTRGVILDSIFKQVDRLGNISVAVLQHYVTTAGKVKWGDKVSDKDKAEAVSPLLPLKRIMYKDNDDGMNWGRDSISVTPILNETHHIDQTIYDRLQWLARLMQDGEPGSDVKIKDYFVNAVHISGDNYDSLKASVIKQAAALKSRVDSKDIQLDLDFEGTMKNLYAKEVAAAQAAKSAATTSPTSTGVTTSPAS
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