NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170824_122837742

Scaffold Ga0170824_122837742


Overview

Basic Information
Taxon OID3300031231 Open in IMG/M
Scaffold IDGa0170824_122837742 Open in IMG/M
Source Dataset NameCoassembly Site 11 (all samples) - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1933
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Mazerulles, Grand Est.
CoordinatesLat. (o)48.7585Long. (o)6.3578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026085Metagenome / Metatranscriptome199Y
F054194Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0170824_1228377421F054194AGGAGMPVRNRRPKISTTIAPENRDFLNSLIRRGKAANLSEAVDRSITFARRAESRKKLADATAAYYASLSGDALKKEQELEAAIGYEASQVDFDAE
Ga0170824_1228377422F026085N/AMKLRAKNHYYIGVKTSGSVNRSNEKGVTVKVGGRSVEKPLWEQQSFLEMVFRFIALLCLVGWGGSVIYIASHAGSMEDTYFRARDLASYFFTAIWIFIFFYAQYRVVPRFIHRDLECHIGLWHAGGSLVLLIFGALQVMVPQTKSDLPSGLLFWITLLGEAAFIGNVMWSYVSGEREVPLLPVVPSAKTTPERVADPGPKSRGWPKSPVKLFGIGAAFFACGGLISIILNVPSFPVPVPISGQMHFLPYGVLWLVAAVPFGVFALLYKFLRDAQKIAFEESLNRLHFIVTIIAVFDMVRVFMAWEQKLISKMLELYFGPEFEWLTGLFVLSAIVFVINIFKSGSQTQSRT
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