NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170824_126556221

Scaffold Ga0170824_126556221


Overview

Basic Information
Taxon OID3300031231 Open in IMG/M
Scaffold IDGa0170824_126556221 Open in IMG/M
Source Dataset NameCoassembly Site 11 (all samples) - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)677
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Mazerulles, Grand Est.
CoordinatesLat. (o)48.7585Long. (o)6.3578Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042033Metagenome / Metatranscriptome159Y
F081702Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0170824_1265562211F081702N/AQNFNEKEKNMNNQNRVLNRQGARDLNPEEVEQVSGGFVHTNFITWGPTGRDGDGLLES
Ga0170824_1265562212F081702AGGAMNEQDRVLIRKGARELNAQEVEKVGGGFNTLAITFGPHGRDGDASIGECGPIC
Ga0170824_1265562213F042033AGGAGMNDQNRVLVRRGARSLNEEEISRVSGGLPTDTVCTVPSKVCPNKDGDASI

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