NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302325_10009325

Scaffold Ga0302325_10009325


Overview

Basic Information
Taxon OID3300031234 Open in IMG/M
Scaffold IDGa0302325_10009325 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21434
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (52.63%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013471Metagenome / Metatranscriptome271Y
F078000Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0302325_100093251F078000AGGAMVGRRPEELCPGGDRASVVAKKRGNARGVKGGRKVERLNKRTKENSTVNVQWTQFGAEQKQVRKPSTLVQSLLAAPATGDNSRTNLK
Ga0302325_1000932519F013471N/AKSRQPGASIKTIGTTSTNIISKRSRGFVLWEILLALTIFCVVAVALIGAVHQIVDAAILLRDESQVRLELQNLLTESSAIKMKPGKSEVTVGDGRVHYEKEIRAVQAKTAAGVVLPNLYEIIVQASWKASGQERSGHAEVTVYQP
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