NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265330_10005129

Scaffold Ga0265330_10005129


Overview

Basic Information
Taxon OID3300031235 Open in IMG/M
Scaffold IDGa0265330_10005129 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6563
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009977Metagenome / Metatranscriptome310Y
F024380Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0265330_100051291F024380N/AMPSTATTQKMPRGSRVKLGGSILALLVLENGRQVRSRLNQLSVNGGLVSLEQPLDEGIKVTVLFHLGVTTIRC
Ga0265330_100051297F009977AGGAGGMNLVQWFNQHSIPFTPLLAYIPLIATVVTTVVSLILVRATLRYTEASDRSLALAREHFEREWAPELHIKLERLSAHDAKILATNLAKISVLMQMVQLRKLSMAVPSLRYFLNEPLVGGTTWSEDLGKRFFDCTGENYTGQVAVSVTFYAAGRMYRTDWFRFQVQVHNGQLMQIEPVNISARRVRVLQPRKGSGNTRSDLVRDVVMGDPEKSEEDAATPAIGSSKR
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