NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265330_10014087

Scaffold Ga0265330_10014087


Overview

Basic Information
Taxon OID3300031235 Open in IMG/M
Scaffold IDGa0265330_10014087 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3713
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076746Metagenome117Y
F079475Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0265330_100140874F079475AGGGGGMRRIAAIGLALAATLAVARADIAPPPLEFIDVVAGDLIFLVIAHDYAPLSHPTAELVGCLEGRPNCALAHDKALIGRRVVGFDGGAFDANRALRAQIVAAFSRDGAPATIEIDFEPDAGDESLRVVFARR
Ga0265330_100140877F076746AGGAGGMRLKILAAAVLAPLVVPAAWADIAPTPDRGPPAGDAGGLSFMVQSVEVEMGPANGPHYSKTQQVVVLTACADGTPNCALARARGAVGLEVVAVDGMGLTPEQGMVRQILAAFADSDAPATIRLTLYGRAADSQPVEVKFARR
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