NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302324_100033736

Scaffold Ga0302324_100033736


Overview

Basic Information
Taxon OID3300031236 Open in IMG/M
Scaffold IDGa0302324_100033736 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9592
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014166Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0302324_1000337365F014166GAGMNRDPLNHEPFAKRTFLTGAAILLPLALLLGPTSAQTPHKKDARTDVPKGVPTNVQLELVRTETGFFEAWKTKDQAYFRDHMPENGIFWNDNGTLSRDQQLAAQQASAKTCTVEGYSLSDFGALPLATGAYLLTYKAEQYATCNGEKMPVHINGSSIYIFKSVHWQAIYRAQVPLKIPGQGIRIE
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