NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308395_1027032

Scaffold Ga0308395_1027032


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1027032 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1766
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F053114Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0308395_10270321F002978GAGMSVRDWRVTLKPWADRRLWFIQARCGGRVVWGVVYDADDPDSVALARRAIATLRAAGADCSALPASLPSAPPGAPGA
Ga0308395_10270322F000642AGGAGMQEMSVALALCAVGAAIWYMRRREAGAGRVRGWLLLYDAVGGWRVLPAAYGDSGIVADGVTYPASLPAVRVDRTLIWIARCDAAALIEHQALERAREAAALASLWRGGGQWIDLLRVLGVVLPAAFAYFTWAQVAGLQALVAQILALVGER
Ga0308395_10270323F001381GAGMQYVVATLYVFVWLALAAGAALVLPRWALPAALVQLAVAYVMVRSWLTAAVGGDD
Ga0308395_10270324F053114N/ALGGIADYTRLMYMLVDYVAYASIVQQALTAQIGIVIVGLGFRAWLVVRRIVLVS
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Institute for Fundamental Biomedical Research
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