NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308395_1042456

Scaffold Ga0308395_1042456


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1042456 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1244
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002179Metagenome / Metatranscriptome586Y
F009196Metagenome / Metatranscriptome321Y

Sequences

Protein IDFamilyRBSSequence
Ga0308395_10424561F002179GGAGGMSNPSLFVSPLVRQAARNLHTVEWLSGNDTWRFNWRFNWLCRRDFWRTRRMMARTPDEAAAWLPALAFAVSCEEEANVLAEFARWPLPEPLPPEAIPWRDRLIQVLEQYPAYTTWEKTIRLAALVRLDRRAERLPEWLREARRARELKPEDRRLRLAALAGWRPRPGDGPPHGDKAEAAQAWVRFWEKRYRTPSSKLDGLLAATALLHLAEAGWLPSGPSPERLREEFHQRVQQWSIRTCQEGEILRILVSSVPADASAPERQQQDIRKWLELTHENVRWEKRKAVWEMLAAWQRESVLERSGRGRL
Ga0308395_10424562F009196N/AAGGGQRRQVRQALRRAGQEVTGTVAPFVNLPPEVLPNFRRLREIETALAAGHLLPSPDDAAENRVTPCAVLARLPEAHPRTDPPGITGRTAGSEPPARHPFPEVIRHE
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