NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302318_10187648

Scaffold Ga0302318_10187648


Overview

Basic Information
Taxon OID3300031258 Open in IMG/M
Scaffold IDGa0302318_10187648 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)989
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051658Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0302318_101876481F051658N/AFDEKDGLVVKYGYGAPGAALAYMVDIRIVRIAPPPASVFAMPAACAGVKPPPTPAEIIADETGDDAANYVSAAGPGSKNSCSIIIRVVAAKTMAPVTRRWQAAIDTTVNGATTPPYTFGVGDDGTAAFSGGGIHEVTSQIHNDMLRIDNPPDHFDLALNVVQPHRGTADTLIYRQCFAPVTMLYYIMKDPTDIGAGADFLYAKAGKNAAAPAH
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