Scaffold Ga0308146_1035464

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308146_1035464

Scaffold Ga0308146_1035464

Overview

Basic Information
Taxon OID	3300031340 Open in IMG/M
Scaffold ID	Ga0308146_1035464 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_322_32.3 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	842
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	80.9595	Long. (^o)	-132.1842	Alt. (m)		Depth (m)	86
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003733	Metagenome / Metatranscriptome	471	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308146_10354641	F003733	AGGA	MKALRTKICTYALALLVSIGFASPSLAGSSDFSGIWVAAHAEMNVVAIDGSSTTPGQGVTVNGTGGSDNTETTQGTIGGFAPTAGYEVGFNLPLGPVFFVTVGVSDGGGDSVAIAKVQDHNNTTDVTLHASDPTWYYIAPSISIFDNSAVYFKFGQAQIDLKAKGDVTGSPNNIDGDMWGIGTTSIANNGLFFKTEAGAIQYDKFSITGIGGDTDRIVEGNPLVGYGHVSI

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