NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307435_1036811

Scaffold Ga0307435_1036811


Overview

Basic Information
Taxon OID3300031357 Open in IMG/M
Scaffold IDGa0307435_1036811 Open in IMG/M
Source Dataset NameSalt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-70
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1302
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.759Long. (o)-70.891Alt. (m)Depth (m).7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082080Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0307435_10368113F082080GAGMTPREAARLYRLEDIGVSLWGYWGTERTGQPKLTSRLSREIIERFTCYEQGPFLYRDVGKGSIMLSLPALEIAGFNLVRITESEEGPVLVAIEGTDQETWEYAVWLYRLVRRIYPSRGKGGKPGQISWKIVATWLHEEPGHFQQFVELLVERKLRHWEQEQKGIAITDKDRKWARQDAFLEIKRGLARAGLKLADLKKSDKNQ
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