Scaffold Ga0307506_10028284

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307506_10028284

Scaffold Ga0307506_10028284

Overview

Basic Information
Taxon OID	3300031366 Open in IMG/M
Scaffold ID	Ga0307506_10028284 Open in IMG/M
Source Dataset Name	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1472
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	47.6684	Long. (^o)	-121.924	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070257	Metagenome / Metatranscriptome	123	Y
F092388	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307506_100282842	F070257	N/A	MAGVLVMASTAATLAAADTKETFAASWEGQAVVLKQRLYTLSYKERGLLGKATDKRDGLFVVTPFNGTYYQFDGRQSKGDIRGADPQRLADTILTTYGGDALDVRQFQKVEPILVTLYEPGVELMVSAVRIDRDRLRLFFTDPRTAESTTATSLTLQWPTPFSRGFSERQAVETILLQYIQPRRHS
Ga0307506_100282843	F092388	GGAGG	MISTSFSVRTCSRARAWAIAGSIVLLASGVHALAQSGAPSGGFLEHEAVTPPLLFREVWQQPPHTGALNDENRRITPQALTNED

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