Scaffold Ga0307954_1009131

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307954_1009131

Scaffold Ga0307954_1009131

Overview

Basic Information
Taxon OID	3300031391 Open in IMG/M
Scaffold ID	Ga0307954_1009131 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Organic Lake, Antarctica - #437
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4043
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Organic Lake
Coordinates	Lat. (^o)	-68.4561	Long. (^o)	78.1899	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000607	Metagenome	992	Y
F002411	Metagenome	561	Y
F029619	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307954_10091315	F000607	GAG	MELGGKLLNSLRIKTQFFERLQSVGVVDGAAHTQKDDVESNGGSLEIVAKIFVLFLCGVQLVLRSGVLTVLDLDKVDAAPSSVEVFRSVLSGVGGCTISGWRCC
Ga0307954_10091316	F002411	GGAG	MVIRLLLPISLETMHNPKVLVLLIALKIMQHAKLCLSVIIFLICVCWHPDRMCRALSTCGQRGQV
Ga0307954_10091317	F029619	GGAG	VLEGRHGGLVGIKALGEENGPCLLYGYDYGFVFGFLCLLLQASGYCRKDFPQGLLF

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