Basic Information | |
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Taxon OID | 3300031412 Open in IMG/M |
Scaffold ID | Ga0315848_107996 Open in IMG/M |
Source Dataset Name | Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T20 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 758 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Dothideomycetidae → Mycosphaerellales → Mycosphaerellaceae → Cercospora → Cercospora sojina | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.7417 | Long. (o) | -117.7042 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F028371 | Metagenome / Metatranscriptome | 191 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315848_1079961 | F028371 | AGTAG | VSGLLGGFSTFFLLLLLTEFDTVVSNVPLSERSTIDLDDGSLDQSVGSDQFVVGSVVDDLEDLGLSGDLFRRPGEVTGVELQSLELVVTTSNSESSDSLFTDLGKGSGSSGFVLLLLLVDGHTTTGKSSLVSGVSRDTHDL |
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