NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308194_10157938

Scaffold Ga0308194_10157938


Overview

Basic Information
Taxon OID3300031421 Open in IMG/M
Scaffold IDGa0308194_10157938 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)705
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009486Metagenome / Metatranscriptome317Y
F033232Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0308194_101579381F033232N/AVMADPSVTPPPRPPAAASGQEQDSFDISEEYGTARKNLPPAGVVAICVAVVAVIIGVYALTHRAKAHSTGSIDDVVVVPVPSEDMVLVAINVSIESHEDKPSRIKSIQVSADVGGNTVSDDAVPAVDAQRYFTAFPDLKQHALNLLTTETRINAGGKVLGTIVASFPVKADAFAARKSLTVTITPYDELPVVITK
Ga0308194_101579382F009486N/AVALGVLEVDGSISCLKYDELNPASQNHMVRRKYLQKHQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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