NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1002240

Scaffold Ga0272425_1002240


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1002240 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32620
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (17.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005901Metagenome386Y
F028667Metagenome190Y
F076668Metagenome117Y
F086375Metagenome110Y
F102179Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100224012F102179N/AMSVHNVSENMSMCSAMHVRSMLLRVMILTMQEMHLDDVYFSRDKISQFKSTTLRSINVEMLTYKNRNVAEKQLNSVAETVDCKQLISHAIVKVLTIHEMIYNFSSKFVVELIKILQQEDEFAVSLKANETMNI
Ga0272425_100224020F086375N/AMFTLFVNSKSIASQNHGENWFNEVKKHYKRQNNDHVIIFKXLHKLRQFNVXKEVNEIDKAAMKDNVRDEIEEERKNKDIHDNASQ
Ga0272425_100224021F076668N/AMTCLLLTSSFLACASARKTSKSSMYSTDHYAIKETSVFKFTTTTKKIMHMSNALSTDILMLCNRKDATNQTLLHCAKFENIRSHLKISFQKXFLKDLXERLCMIVLKQICYSMTIAFSALPXVLFKKSLKTLXFSLXKVSALFFCIITLVVEFLLTFCSMQTSTXXQFMSNASSFKIEIXDLXRISXXILMSCFSRQTRKCLSLSVR
Ga0272425_100224032F028667N/AMIRNNLLRSFRKFIRDSLNYFYQNTSANLLNQSLNLTTIKPTLISFTMTHDSESVESQTAHLLRSIASKXVSLISFDASFDVKNADISXNIKTEEQLRQXVHDQSNKIIKMLNELRSQRDMTLKLNEQXIVVQVEHDKRLNQLEVKQMIINTLEETNKCYREKMLNLKNKLKEVLHSVNQSRSRQSTKPRASIKNYTXRESSTLFNNDHHKFFKFLNLFIFTDEDELTXDSXRVKIDDKLQTNVDHFDNKNICIVYVISRLEDDAAEHIFAXRRHNTSHSYILIDELFEHLKEIYNELNRNQKCRREYNALRQADKSFNVFYFNFMKLFSYLEYDDCILMNDLQNKINNHLQNTLSVCSENFTSLTRLRIFLQDVNNKQXVNYQLRSQLRTVIVKVTVVSDKCAATSLSVTTLIIDYVKFIIFSIIFSIFESDQAKSLIICYICKILKHLFKNCSQNKINTSAFHAFISRLHEIVISKNKENEKMSFKNSEAKN
Ga0272425_10022404F005901N/ALNSFTSIYKLFNYLKEIYDELNKSXKSQCEYNALKQADKSFNVFYFNFMKLFSYLDYDDHTLINDLQNKINNRLQNALSICSKNFTSLLHLKKFLQDVNNKQRVNYQLRSERCIVIVKVTVISDKCATLLSVMTLIIDYVKSIIFSIFKSARSFIICYICKTSSHLFKNCSQNKIDIFASXAFTSRLHEIIISKNKENEKMSFKNSEAKN
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